Proteinski motivi i klasifikacija proteinskih familija

master's thesis

• Title (english): Protein motifs and classification of protein families
• Author: Kristin Kokan
• Mentor: Pavle Goldstein (mentor)
• Committee member: Pavle Goldstein (predsjednik povjerenstva)
• Committee member: Snježana Lubura Strunjak (član povjerenstva)
• Committee member: Josip Tambača (član povjerenstva)
• Committee member: Zvonimir Bujanović (član povjerenstva)
• Granter: University of Zagreb; Faculty of Science; (Department of Mathematics); Zagreb
• Defense date and country: 2023-11-27, Croatia
• Scientific / art field, discipline and subdiscipline: NATURAL SCIENCES; Mathematics

Abstract

Ovaj diplomski rad bavi se promatranjem MADS-box familije transkripcijskih faktora. Cilj rada je povećati točnost metode pronalaženja MADS-box motiva u biljnim proteomima i, ujedno, proučiti filogenetsku strukturu MADS-box familije. Promatrano je sedam biljnih proteoma, gdje se MADS-box familiju tražilo s dva karakteristična motiva različitih duljina. Ispostavlja se da je filogenetska struktura MADS-box familije nezavisna od izbora motiva za pretragu. Isto tako, djelomično je potvrđeno poznato opažanje o različitoj strukturi MADS-box familije u divljih i uzgajanih biljaka, uz nekoliko značajnih izuzetaka.

Abstract (english)

This thesis examines the MADS-box family of transcription factors. The aim of the thesis is to improve the accuracy of the search method of MADS-box motifs in plant proteomes and, simultaneously, to study the phylogenetic structure of the MADS-box family. We examined seven plant proteomes, where we searched for the MADS-box family using two characteristic motifs of different lengths. It turns out that the phylogenetic structure of the MADS-box family is independent of the motif selection for the search. Likewise, the known observation of the different structure of the MADS-box family in wild and cultivated plants has been partially confirmed, with a few significant exceptions.

• Keywords: MADS-box familija transkripcijskih faktora; biljni proteomi; divlje biljake; uzgajane biljake
• Keywords (english): MADS-box family of transcription factors; plant proteomes; wild plants; cultivated plants
• Language: croatian
• URN:NBN: urn:nbn:hr:217:472607
• Study programme: Title: Mathematical Statistics; Study programme type: university; Study level: graduate; Academic / professional title: sveučilišni magistar matematike (sveučilišni magistar matematike)
• Type of resource: Text
• File origin: Born digital
• Access conditions: Open access
• Created on: 2024-02-12 12:36:36